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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46817016_46817955_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46817016 - 46817955
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCCCCTAAG
Flanking Amino Acid:
MLASSRRLVEGYQMAVSPDT
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.5
28.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.7
0.49
1
76.1
26.5
Minor 5ss
32.1
-2
3.1
40.5
45.7
Minor BPS
42.7
-0.7
2.3
54.02
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016083
46814308 - 46818340
4033