Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46828280_46828676_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46828280 - 46828676

Intron Length:

397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGAAA

5'SS Class:

major

3'SS Sequence:

CTGTTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

CCATGTGTAATG

Flanking Amino Acid:

LDVTYPEPLPRDHPLLKLNN

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

68.2

38.4

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

85.6

0.8

80.6

31.4

Minor 5ss

29.5

-2.3

3.4

38.5

46.8

Minor BPS

41.3

-0.8

2.3

42.65

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015366

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035518

46827911 - 46834030

6120

ENSAPLT00000016008

46827911 - 46834722

6812