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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46828774_46829562_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46828774 - 46829562
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAATA
Flanking Amino Acid:
PTATLINIGRGALIDQDALV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.8
0.6
1
70.9
38.6
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
55.6
0.17
1.5
66.14
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035518
46827911 - 46834030
6120
ENSAPLT00000016008
46827911 - 46834722
6812