About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46832189_46833785_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46832189 - 46833785
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATTCCTCTATT
Flanking Amino Acid:
GRSLSAPQTKAMSEQELPGL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
78.1
0.63
0.8
73.5
29.8
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
62.1
0.46
1.9
81.52
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035518
46827911 - 46834030
6120