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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46832189_46834542_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46832189 - 46834542
Intron Length:
2354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATTCCTCTATT
Flanking Amino Acid:
VQVNSLVVIKAMSEQELPGL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
78.1
0.63
0.8
73.5
29.8
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
62.1
0.46
1.9
81.52
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016008
46827911 - 46834722
6812