Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4683792_4688101_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4683792 - 4688101

Intron Length:

4310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAAGT

5'SS Class:

major

3'SS Sequence:

TCTACGTTTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TCTACGTTTACA

Flanking Amino Acid:

DDYHAKEIFQHCDKSKTEAL

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

75.5

40.6

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

0.65

0.9

71.8

Minor 5ss

40.7

-1

58.6

45.5

Minor BPS

49.4

-0

2.4

68.03

44.1

Associated Gene:

Gene:

PLCD1

Ensembl Gene ID:

ENSAPLG00000007299

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023534

4667210 - 4718047

50838

ENSAPLT00000007635

4667210 - 4710060

42851