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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46859135_46867173_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46859135 - 46867173
Intron Length:
8039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTCCTTTCCT
Flanking Amino Acid:
LVANILRILFWFGRRFESPL
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
SLC66A2
Ensembl Gene ID:
ENSAPLG00000022311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039813
46858858 - 46908914
50057