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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46867308_46871468_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46867308 - 46871468
Intron Length:
4161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCCCCTCAACT
Flanking Amino Acid:
DLNIKRRSFAAADSKDEEIK
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
85.7
27.7
Minor 5ss
29.3
-2.4
2.9
35.1
41.4
Minor BPS
65.8
0.57
1.6
77.75
44.4

Associated Gene:

Gene:
SLC66A2
Ensembl Gene ID:
ENSAPLG00000022311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039813
46858858 - 46908914
50057