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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47024086_47042371_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47024086 - 47042371
Intron Length:
18286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGACTCTTTACT
Flanking Amino Acid:
KEDLESMDKEVDDILGEGSD
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.4
0.48
1
69.3
36.5
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
60.2
0.4
1.6
75.08
40.9

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023618
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080
ENSAPLT00000038873
47002088 - 47089167
87080