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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47042538_47048991_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47042538 - 47048991
Intron Length:
6454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TGAAATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATGT
Flanking Amino Acid:
LPVHGEHSSFRVVQPHQQQI
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.9
0.54
1
69.7
45.3
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
60.2
0.4
1.9
78.81
43.9

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038873
47002088 - 47089167
87080
ENSAPLT00000023618
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080