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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4705571_4718013_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4705571 - 4718013
Intron Length:
12443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTATCACTACTC
Flanking Amino Acid:
ESNGTFLACNSLKDDKDLKF
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
78.3
0.7
1
80
32.1
Major PPT
84.1
0.77
0.7
77
31.7
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
47.2
-0.2
2.1
65.29
40.1

Associated Gene:

Gene:
PLCD1
Ensembl Gene ID:
ENSAPLG00000007299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023534
4667210 - 4718047
50838