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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47058934_47060368_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47058934 - 47060368
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
CTTTTTGTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
AAATATGTATGT
Flanking Amino Acid:
GSREIQVKKKINHSTKPEAQ
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
78.9
29.6
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
80.8
0.69
0.8
80.5
31.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.4
Minor BPS
37.5
-0.8
2.3
53.03
42

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038873
47002088 - 47089167
87080
ENSAPLT00000023618
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080