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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47060536_47061651_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47060536 - 47061651
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTTATCAACT
Flanking Amino Acid:
IDPFSKTGNLRDLFPCGDSM
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82.3
0.73
0.7
81.5
30.6
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
63
0.49
1.8
83.9
36.3

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038873
47002088 - 47089167
87080
ENSAPLT00000023618
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080