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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47061743_47067623_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47061743 - 47067623
Intron Length:
5881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTTCTTCCAAA
Flanking Amino Acid:
GSRLYAHTIAGFLDPEKKLF
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
66.3
0.37
1
68.3
30.9
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
48
-0.1
2.1
64.41
42.2

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038873
47002088 - 47089167
87080
ENSAPLT00000023618
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080