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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47069156_47070525_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47069156 - 47070525
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTAAGCTTAGCC
Flanking Amino Acid:
SVPELKVSSEQAEQLGREDQ
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
79.1
33.8
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
52.5
0.06
2
68.26
42.9

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023618
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080
ENSAPLT00000038873
47002088 - 47089167
87080