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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47070620_47087956_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47070620 - 47087956
Intron Length:
17337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GCTCTTTTGATG
Flanking Amino Acid:
CARPGQVVAPGIQSKNGKQN
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
65.7
0.35
1
66
39.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
50.4
-0.1
1.3
51.35
37.7

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023618
47002088 - 47089167
87080