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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47075187_47087956_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47075187 - 47087956
Intron Length:
12770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTAGAACTAATG
Flanking Amino Acid:
CARPGQVVAPGGVLVKLEGC
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.6
0.73
0.9
77.8
36.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
40
-0.8
2
44.27
41

Associated Gene:

Gene:
CTDP1
Ensembl Gene ID:
ENSAPLG00000014757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038873
47002088 - 47089167
87080
ENSAPLT00000015393
47002088 - 47089167
87080