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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47185316_47216836_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47185316 - 47216836
Intron Length:
31521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TCTTTCTTTACA
Flanking Amino Acid:
QSSHIMLQPQ*
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
92.2
0.95
0.6
87.4
23.1
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
71
0.65
1.6
78.67
37.8

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013577
47185313 - 47292798
107486