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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47217217_47231960_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47217217 - 47231960
Intron Length:
14744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
YQLFTYLPANVPIIKTEPTD
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
69.6
36.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
38.5
-1.3
2.9
45.8
43.6
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047354
47185159 - 47292798
107640
ENSAPLT00000046870
47185159 - 47297675
112517
ENSAPLT00000025344
47198145 - 47292798
94654
ENSAPLT00000013577
47185313 - 47292798
107486