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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47232094_47233832_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47232094 - 47233832
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGCCCTGACCT
Flanking Amino Acid:
AKTDKEMCKPNSLVVEIPPF
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
54.6
0.22
1.8
73.03
43.4

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025344
47198145 - 47292798
94654
ENSAPLT00000020186
47226994 - 47292798
65805
ENSAPLT00000013577
47185313 - 47292798
107486
ENSAPLT00000047354
47185159 - 47292798
107640
ENSAPLT00000046870
47185159 - 47297675
112517