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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47233889_47249180_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47233889 - 47249180
Intron Length:
15292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGATAT
U12 Branch Point Sequence:
AAGGTCAGAACT
Flanking Amino Acid:
SKVIFVEKAPDGHHVWEMEA
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
56.3
0.16
1.2
53
42.8
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
46.2
-0.2
1.8
61.16
42.2

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046870
47185159 - 47297675
112517
ENSAPLT00000025344
47198145 - 47292798
94654
ENSAPLT00000020186
47226994 - 47292798
65805
ENSAPLT00000013577
47185313 - 47292798
107486
ENSAPLT00000047354
47185159 - 47292798
107640