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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47252073_47255147_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47252073 - 47255147
Intron Length:
3075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
TCCTTTTGGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ATGAATTGAATT
Flanking Amino Acid:
PLLPENNMRAIIDCAGILKL
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
65.5
38.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
68.9
0.42
1
67.8
37.8
Minor 5ss
35.7
-1.6
3.2
48.9
39.9
Minor BPS
48.7
-0
1.6
65
39.6

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025344
47198145 - 47292798
94654
ENSAPLT00000020186
47226994 - 47292798
65805
ENSAPLT00000013577
47185313 - 47292798
107486
ENSAPLT00000047354
47185159 - 47292798
107640
ENSAPLT00000046870
47185159 - 47297675
112517