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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47255351_47282187_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47255351 - 47282187
Intron Length:
26837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAAAA
5'SS Class:
major
3'SS Sequence:
GTTCTCTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
TGGTGCTCAGTG
Flanking Amino Acid:
ASAGGHPIVQLHGYLESEPL
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
68
38.9
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
75.6
0.58
1
69.3
41.7
Minor 5ss
37.3
-1.4
3.1
48.9
46.9
Minor BPS
43
-0.6
2.1
48.18
45.5

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046870
47185159 - 47297675
112517
ENSAPLT00000025344
47198145 - 47292798
94654
ENSAPLT00000020186
47226994 - 47292798
65805
ENSAPLT00000013577
47185313 - 47292798
107486
ENSAPLT00000047354
47185159 - 47292798
107640