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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47282348_47291566_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47282348 - 47291566
Intron Length:
9219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATTTTTAATA
Flanking Amino Acid:
PKSLSPTSYMSPSLPALDWQ
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.3
0.66
0.8
73.7
29.8
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
71.4
0.67
1.1
72.7
33

Associated Gene:

Gene:
NFATC1
Ensembl Gene ID:
ENSAPLG00000013017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020186
47226994 - 47292798
65805
ENSAPLT00000013577
47185313 - 47292798
107486
ENSAPLT00000047354
47185159 - 47292798
107640
ENSAPLT00000046870
47185159 - 47297675
112517
ENSAPLT00000025344
47198145 - 47292798
94654