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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47321962_47325161_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47321962 - 47325161
Intron Length:
3200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATTATTTATTT
Flanking Amino Acid:
ASLAFLNEYFDVAFITTVTF
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
52.3
0.15
1.8
69.6
41.9

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037135
47321693 - 47468296
146604