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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47325366_47326046_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47325366 - 47326046
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTTTGTTAACT
Flanking Amino Acid:
LIWVLISIYQGGILMYGALL
Intron Amino Acid Position:
961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.5
0.53
0.9
64.9
41.2
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
69.1
0.68
2
88.23
36.9

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472
ENSAPLT00000037135
47321693 - 47468296
146604