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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47331337_47331768_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47331337 - 47331768
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATATTTGTAACC
Flanking Amino Acid:
ADCGIGIEGKEGKQASLAAD
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
87.2
0.84
0.8
81.2
36.5
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
55.7
0.16
2
68.76
36.9

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037135
47321693 - 47468296
146604
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472