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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47338369_47339528_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47338369 - 47339528
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTCCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTCCATTATT
Flanking Amino Acid:
VQYNDWLEEECGNMAREGLR
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
69.6
0.44
1
67.4
39.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
61.9
0.45
1.9
83.55
36.9

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472
ENSAPLT00000037135
47321693 - 47468296
146604