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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47353565_47362218_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47353565 - 47362218
Intron Length:
8654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCGG
5'SS Class:
major
3'SS Sequence:
TTTTTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATTACA
Flanking Amino Acid:
RLVYLLTDKTGTLTQNEMIF
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
58.6
45.9
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.7
85.2
28
Minor 5ss
39.1
-1.2
2.9
50
46.3
Minor BPS
62.1
0.37
1.9
80.12
35.1

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037135
47321693 - 47468296
146604
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472