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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47362362_47372681_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47362362 - 47372681
Intron Length:
10320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTCACACTGATC
Flanking Amino Acid:
LLLFSYIIPISLRVNLDMGK
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
46.3
-0.3
1.9
60.49
38.8

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037135
47321693 - 47468296
146604
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472