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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4736383_4737448_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4736383 - 4737448
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGTA
5'SS Class:
major
3'SS Sequence:
TTGCCTATAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGCCTATAACA
Flanking Amino Acid:
HEAFTEELQKLVAEYNCRLT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.7
36.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.3
0.48
1
66.6
38.2
Minor 5ss
32.3
-2
3.7
47
48.4
Minor BPS
63
0.4
1.6
73.81
37.7

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538