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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47372843_47395554_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47372843 - 47395554
Intron Length:
22712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGGTTTTTACTG
Flanking Amino Acid:
VMNTSNPKNKVGLLDLELNQ
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.2
74.9
38.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.9
0.58
0.8
73.9
31.3
Minor 5ss
35
-1.7
2.7
40.6
45.6
Minor BPS
50.6
-0.1
1.7
54.65
41.7

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472
ENSAPLT00000037135
47321693 - 47468296
146604