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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4739434_4739696_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4739434 - 4739696
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
MEKIIAEANKGDTSFVPVFH
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538