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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4739779_4740197_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4739779 - 4740197
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAAATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCCTTCTTAAAT
Flanking Amino Acid:
SDYEVGHVYEMTVEIQNVTS
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
64.9
0.34
1.1
66
38.1
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
71.7
0.76
1.4
80.39
41.7

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538