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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47405201_47413402_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47405201 - 47413402
Intron Length:
8202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATACATTAATC
Flanking Amino Acid:
SCTQRLPALGDLFSINAYVY
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.4
0.73
0.9
76
37.4
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
61.2
0.33
1.6
68.53
36.2

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472
ENSAPLT00000037135
47321693 - 47468296
146604
ENSAPLT00000027022
47321693 - 47468296
146604