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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4743067_4744298_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4743067 - 4744298
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ACATTATTATTT
Flanking Amino Acid:
LAPGQSTTVEVVFFPSSPEV
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
48.3
-0
1.8
63.73
40.9

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538