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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47451872_47455700_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47451872 - 47455700
Intron Length:
3829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACAGA
5'SS Class:
major
3'SS Sequence:
GTATCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTATCTTTAACA
Flanking Amino Acid:
GYLYTYWAPLGFVLTVTVVR
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
64
41.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74.2
0.55
1
69.7
40.2
Minor 5ss
38.2
-1.3
3
45.8
44.3
Minor BPS
80.4
0.95
1.1
81.17
33.8

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037135
47321693 - 47468296
146604
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000013669
47321825 - 47468296
146472