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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47458650_47468081_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47458650 - 47468081
Intron Length:
9432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTAGTTTGAAA
Flanking Amino Acid:
ICGGWKFLCTSCSDWLINIC
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
39.3
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
43
-0.8
2.4
53.7
43.4
Minor BPS
49.8
-0
1.9
67.94
38.4

Associated Gene:

Gene:
ATP9B
Ensembl Gene ID:
ENSAPLG00000013079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037135
47321693 - 47468296
146604
ENSAPLT00000027022
47321693 - 47468296
146604
ENSAPLT00000018758
47321825 - 47468296
146472
ENSAPLT00000013669
47321825 - 47468296
146472