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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4748432_4748983_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4748432 - 4748983
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTAATAATT
Flanking Amino Acid:
MVLRDIPESPSLVKEGMLQN
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.6
0.8
0.6
81.9
23
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
56.2
0.27
1.9
78.73
37.1

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538