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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47523352_47527819_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47523352 - 47527819
Intron Length:
4468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TCTAATTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTCTAATT
Flanking Amino Acid:
IQNGGIPQLPKSKELPVFLH
Intron Amino Acid Position:
1205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.6
0.67
0.9
73.3
36.7
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
75
0.86
1.6
92.5
29.7

Associated Gene:

Gene:
SALL3
Ensembl Gene ID:
ENSAPLG00000013214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017746
47521885 - 47547406
25522
ENSAPLT00000013762
47521885 - 47547406
25522