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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47528075_47529051_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47528075 - 47529051
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGTTTCTTGTCC
Flanking Amino Acid:
RAFTTKGNLKVHMGTHMWNN
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
83.2
0.75
0.9
77.3
37
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
47.5
-0.2
3.5
73.9
37.2

Associated Gene:

Gene:
SALL3
Ensembl Gene ID:
ENSAPLG00000013214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013762
47521885 - 47547406
25522
ENSAPLT00000017746
47521885 - 47547406
25522