About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47529393_47529608_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47529393 - 47529608
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTTATTTGAACC
Flanking Amino Acid:
FSLLFLNRERGPSQSTPSLV
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
68.9
0.42
0.9
60.1
40.7
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
59.4
0.27
1.4
68.46
36.6

Associated Gene:

Gene:
SALL3
Ensembl Gene ID:
ENSAPLG00000013214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017746
47521885 - 47547406
25522
ENSAPLT00000013762
47521885 - 47547406
25522