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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47532546_47541406_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47532546 - 47541406
Intron Length:
8861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTGATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATCTTTTGATT
Flanking Amino Acid:
SSPPGAAARPAVPGEGADDG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
65.8
40.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
28
-2.5
3.3
32.2
42.4
Minor BPS
59.6
0.38
1.1
70.67
34

Associated Gene:

Gene:
SALL3
Ensembl Gene ID:
ENSAPLG00000013214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017746
47521885 - 47547406
25522