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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4755169_4756673_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4755169 - 4756673
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTGATTCACA
Flanking Amino Acid:
FCIELKTNITGELKDLVLSC
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
87.3
0.84
0.7
84.7
23
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
47.8
-0.1
2.4
68.02
44.4

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538