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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4756805_4758213_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4756805 - 4758213
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATACTTACTT
Flanking Amino Acid:
YSVPCESGAASDGRQILQSP
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.9
84.2
30.9
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
58.4
0.34
1.8
75.21
41.3

Associated Gene:

Gene:
DLEC1
Ensembl Gene ID:
ENSAPLG00000006960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007244
4735783 - 4772320
36538