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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4774296_4774441_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4774296 - 4774441
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
LLNELKRRGKRAYGVVSMCI
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.7
0.78
0.8
76.7
37.4
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
ACAA1
Ensembl Gene ID:
ENSAPLG00000006202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006464
4774220 - 4782839
8620