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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4774588_4775376_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4774588 - 4775376
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
ATCCTGTGAAAC
Flanking Amino Acid:
FEINEAFASQAVYCVEKLGI
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
42.5
-0.5
2.1
52
38.8

Associated Gene:

Gene:
ACAA1
Ensembl Gene ID:
ENSAPLG00000006202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006464
4774220 - 4782839
8620