About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4775433_4776169_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4775433 - 4776169
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCTGAACC
Flanking Amino Acid:
YAIPAAVEKAGLTLNDIDIF
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.5
0.35
0.9
59.1
36
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
79.3
0.9
1.3
87.1
29.2

Associated Gene:

Gene:
ACAA1
Ensembl Gene ID:
ENSAPLG00000006202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006464
4774220 - 4782839
8620