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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47771505_47773009_R

Intron Information:

Intron Rank:
141096
Intron Class:
major
Intron Phase:
Intron Coordinates:
47771505 - 47773009
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.6
0.53
0.9
66.3
38.9
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
54
0.1
1.9
72.45
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023244
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038898
47771148 - 47774050
2903