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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47773109_47773584_R

Intron Information:

Intron Rank:
141097
Intron Class:
major
Intron Phase:
Intron Coordinates:
47773109 - 47773584
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTCTCCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.2
0.48
0.9
63.3
38.5
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
55
0.15
2.1
78.29
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023244
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038898
47771148 - 47774050
2903